Name | Affliation | Group/Project |
Bulent Arman Aksoy | Tri-I Training Program in Computational Biology and Medicine | Patch: Alignment and integration of pathways that are represented in BioPAX |
Kira Anthony | Nature Publishing Group | NCI-Nature Pathway Interaction Database (PID), BioPAX |
Marco Antoniotti | Università degli Studi di Milano Bicocca | Simulation of Intestinal Crypts |
Nadia Anwar | MSKCC | BioPAX |
Ferhat Ay | University of Florida | |
Ozgun Babur | MSKCC | ChiBE, Factoid, Paxtools |
Gary Bader | University of Toronto | BioPAX, Pathway Commons, cPath, Cytoscape, Cytoscape Web, GeneMANIA |
Frank Bergmann | California Institute of Technology | Modeling and Simulation software for Systems Biology based on SBML, SBGN, SED-ML |
Michael Blinov | Center for Cell Analysis and Modeling, University of Connecticut Health Center | SyBiL BioNetGen |
Mike Cooling | Auckland Bioengineering Institute | CellML metadata specifications, CellML model repository, CellML model construction |
Tobias Czauderna | IPK Gatersleben, Germany | SBGN-ED, LibSBGN |
Jürgen Eils | DKFZ | |
Emek Demir | MSKCC | BioPAX SBGN Pathway Commons |
Peter D'Eustachio | NYU School of Medicine | Reactome pathways database |
Ashok Reddy Dinasarapu | University of California, San Diego | The Signaling Gateway Molecule Pages (SGMP) database, BioPAX |
Ugur Dogrusoz | Bilkent University | PATIKA, ChiBE (Chisio BioPAX Editor), VISIBIOweb |
Michele Donato | Wayne State University | Signaling Pathway Analysis, modeling of complex biological systems, ontologies for the description of biological systems |
Andreas Dräger | Center for Bioinformatics Tuebingen (ZBIT) | JSBML, SBMLsqueezer, SBML2LaTeX, SBMLsimulator, KEGGtranslator |
Michel Dumontier | Carleton University | Bio2RDF, formalization and reasoning about SBML + BioPAX models, SADI semantic web services |
Franco du Preez | The University of Manchester | SysMO-SEEK |
Andrew Gibson | Universiteit van Amsterdam | |
Martin Golebiewski | HITS gGmbH | SABIO-RK, SBML, MIRIAM |
Martin Graesslin | German Cancer Research Center | JUMMP Project for developing a new Software base for Biomodels DB |
Benjamin Gross | MSKCC | Pathway Commons, cpath/cpath2 |
Robin Haw | OICR | Reactome, SBGN-based visualization, SBML and BioPAX, PSI-MITAB |
Ron Henkel | University of Rostock | model retrieval & ranking, model versioning |
Stefan Hoops | Virginia Bioinformatics Institute | COPASI, SBML |
Michael Hucka | California Institute of Technology | SBML, Biomodels.net |
Daniel Hyduke | University of California, San Diego | The COBRA Toolbox SBML and other sys bio standards |
Gael Jalowicki | EMBL-EBI | graphical representation of BioModels Database |
Nick Juty | EMBL-EBI | SBO, MIRIAM |
Sarah Keating | EMBL-EBI | All SBML-related software |
Martina Kutmon | Department of Bioinformatics, BiGCaT | PathVisio |
Camille Laibe | EMBL-EBI | MIRIAM standard, MIRIAM Resources, BioModels Database, SBO |
Nicolas Le Novère | EMBL-EBI | BioModels Database, BioPAX, MIASE, MIRIAM, SBGN, SBML, SBO, SED-ML |
Joanne Luciano | Tetherless World Constellation, Rensselaer Polytechnic Institute | |
Augustin Luna | National Cancer Institute / Boston University | MIM, BioPAX, SBGN |
Huaiyu Mi | USC | Panther Pathway, SBGN |
Stuart Moodie | University of Edinburgh | SBGN |
Ion I. Moraru | University of Connecticut Health Center | jlibSEDML, SBML spatial, BioPAX@VCell |
Chris Myers | University of Utah | iBioSim |
David Nickerson | Auckland Bioengineering Institute, The University of Auckland | CellML, SED-ML, model annotation, model repositories |
Tim Ogilvie | | |
Brett Olivier | Centrum Wiskunde & Informatica (CWI) | Python Simulator for Cellular Systems PySCeS SBML |
Suzanne Paley | SRI International | BioPAX export/import from BioCyc, Pathway Tools |
Alexander Pico | Gladstone Institutes | GenMAPP, Cytoscape and WikiPathways. BioPAX and SBGN |
Igor Rodchenkov | University of Toronto | Pathway Commons, BioPAX, BioPAX Validator, BridgeDb (helped with) |
Nicolas Rodriguez | EMBL-EBI | JSBML, libSBML, Biomodels DB, SBMLeditor, SBML Converters - a set of converters from SBML to other formats, like BioPax, CellML, XPP, SBGN/SVG |
Oliver Ruebenacker | Virtual Cell | Virtual Cell |
Sven Sahle | University of Heidelberg | COPASI -- a software tool for editing, simulation and analysis of biochemical computational models |
Falk Schreiber | IPK Gatersleben & University Halle-Wittenberg | SBGN, automatic layout, SBGN-ED, Vanted, Petri nets, modelling, visualisation |
Neil Swainston | Manchester Centre for Integrative Systems Biology | MCISB,SBML |
Lucian Smith | University of Washington, Seattle | Antimony, libSBML |
Anatoly Sorokin | Institute of Cell Biophysics RAS | |
Andrea Splendiani | Rothamsted Research, UK | BioPAX |
Martijn van Iersel | Netherlands Consortium for Systems Biology | BioPAX, LibSBGN |
Alice Villeger | University of Manchester | Arcadia: a visualization tool for metabolic pathways, LibSBGN: software implementation of SBGN |
Katja Wegner | Cooperative State University Karlsruhe | SBML, SBGN |
Tommy Yu | Auckland Bioengineering Institute | Physiome Model Repository 2 |
Anna Zhukova | EMBL-EBI | Kinetic Simulation Algorithm Ontology |