HARMONY 2011 - List of Attendees

Name Affliation Group/Project
Bulent Arman Aksoy Tri-I Training Program in Computational Biology and Medicine Patch: Alignment and integration of pathways that are represented in BioPAX
Kira Anthony Nature Publishing Group NCI-Nature Pathway Interaction Database (PID), BioPAX
Marco Antoniotti Università degli Studi di Milano Bicocca Simulation of Intestinal Crypts
Nadia Anwar MSKCC BioPAX
Ferhat Ay University of Florida
Ozgun Babur MSKCC ChiBE, Factoid, Paxtools
Gary Bader University of Toronto BioPAX, Pathway Commons, cPath, Cytoscape, Cytoscape Web, GeneMANIA
Frank Bergmann California Institute of Technology Modeling and Simulation software for Systems Biology based on SBML, SBGN, SED-ML
Michael Blinov Center for Cell Analysis and Modeling, University of Connecticut Health Center SyBiL BioNetGen
Mike Cooling Auckland Bioengineering Institute CellML metadata specifications, CellML model repository, CellML model construction
Tobias Czauderna IPK Gatersleben, Germany SBGN-ED, LibSBGN
Jürgen Eils DKFZ
Emek Demir MSKCC BioPAX SBGN Pathway Commons
Peter D'Eustachio NYU School of Medicine Reactome pathways database
Ashok Reddy Dinasarapu University of California, San Diego The Signaling Gateway Molecule Pages (SGMP) database, BioPAX
Ugur Dogrusoz Bilkent University PATIKA, ChiBE (Chisio BioPAX Editor), VISIBIOweb
Michele Donato Wayne State University Signaling Pathway Analysis, modeling of complex biological systems, ontologies for the description of biological systems
Andreas Dräger Center for Bioinformatics Tuebingen (ZBIT) JSBML, SBMLsqueezer, SBML2LaTeX, SBMLsimulator, KEGGtranslator
Michel Dumontier Carleton University Bio2RDF, formalization and reasoning about SBML + BioPAX models, SADI semantic web services
Franco du Preez The University of Manchester SysMO-SEEK
Andrew Gibson Universiteit van Amsterdam
Martin Golebiewski HITS gGmbH SABIO-RK, SBML, MIRIAM
Martin Graesslin German Cancer Research Center JUMMP Project for developing a new Software base for Biomodels DB
Benjamin Gross MSKCC Pathway Commons, cpath/cpath2
Robin Haw OICR Reactome, SBGN-based visualization, SBML and BioPAX, PSI-MITAB
Ron Henkel University of Rostock model retrieval & ranking, model versioning
Stefan Hoops Virginia Bioinformatics Institute COPASI, SBML
Michael Hucka California Institute of Technology SBML, Biomodels.net
Daniel Hyduke University of California, San Diego The COBRA Toolbox SBML and other sys bio standards
Gael Jalowicki EMBL-EBI graphical representation of BioModels Database
Nick Juty EMBL-EBI SBO, MIRIAM
Sarah Keating EMBL-EBI All SBML-related software
Martina Kutmon Department of Bioinformatics, BiGCaT PathVisio
Camille Laibe EMBL-EBI MIRIAM standard, MIRIAM Resources, BioModels Database, SBO
Nicolas Le Novère EMBL-EBI BioModels Database, BioPAX, MIASE, MIRIAM, SBGN, SBML, SBO, SED-ML
Joanne Luciano Tetherless World Constellation, Rensselaer Polytechnic Institute
Augustin Luna National Cancer Institute / Boston University MIM, BioPAX, SBGN
Huaiyu Mi USC Panther Pathway, SBGN
Stuart Moodie University of Edinburgh SBGN
Ion I. Moraru University of Connecticut Health Center jlibSEDML, SBML spatial, BioPAX@VCell
Chris Myers University of Utah iBioSim
David Nickerson Auckland Bioengineering Institute, The University of Auckland CellML, SED-ML, model annotation, model repositories
Tim Ogilvie
Brett Olivier Centrum Wiskunde & Informatica (CWI) Python Simulator for Cellular Systems PySCeS SBML
Suzanne Paley SRI International BioPAX export/import from BioCyc, Pathway Tools
Alexander Pico Gladstone Institutes GenMAPP, Cytoscape and WikiPathways. BioPAX and SBGN
Igor Rodchenkov University of Toronto Pathway Commons, BioPAX, BioPAX Validator, BridgeDb (helped with)
Nicolas Rodriguez EMBL-EBI JSBML, libSBML, Biomodels DB, SBMLeditor, SBML Converters - a set of converters from SBML to other formats, like BioPax, CellML, XPP, SBGN/SVG
Oliver Ruebenacker Virtual Cell Virtual Cell
Sven Sahle University of Heidelberg COPASI -- a software tool for editing, simulation and analysis of biochemical computational models
Falk Schreiber IPK Gatersleben & University Halle-Wittenberg SBGN, automatic layout, SBGN-ED, Vanted, Petri nets, modelling, visualisation
Neil Swainston Manchester Centre for Integrative Systems Biology MCISB,SBML
Lucian Smith University of Washington, Seattle Antimony, libSBML
Anatoly Sorokin Institute of Cell Biophysics RAS
Andrea Splendiani Rothamsted Research, UK BioPAX
Martijn van Iersel Netherlands Consortium for Systems Biology BioPAX, LibSBGN
Alice Villeger University of Manchester Arcadia: a visualization tool for metabolic pathways, LibSBGN: software implementation of SBGN
Katja Wegner Cooperative State University Karlsruhe SBML, SBGN
Tommy Yu Auckland Bioengineering Institute Physiome Model Repository 2
Anna Zhukova EMBL-EBI Kinetic Simulation Algorithm Ontology